Field of Science

The Little Tike that is Tychus

Male (left) and female of Tychus niger, copyright Lech Borowiec.

Another brief beetle post for today. The species in the image above is the type species of Tychus, a genus of about 150 species of pselaphine beetles found in Eurasia and North America. Chandler (1988) regarded the North American species as a separate genus Hesperotychus but Kurbatov & Sabella (2008) felt that the differences between species from the two continents were not enough to warrant separation. There's probably still some work to be done here.

Like many other pselaphines, most of the work on Tychus has focused on the morphology of the various species, with relatively little having been said about its life habits. Heer (1841) described the habitat of T. niger as 'sub lapidibus et in graminosis' which I believe means 'under stones and among grass', and Kurbatov & Sabella (2008) recorded collecting a specimen of Atychodea pilicollis, a related species, in damp sand. The large, broad-ended palps (the appendages on the head behind the antennae) of Tychus species suggests that they are probably micropredators, like the pselaphine Bryaxis puncticollis whose hunting behaviour was described in an earlier post. Like most pselaphines, the small size of Tychus species means that they generally escape observation.

Tychus is the largest genus in the pselaphine tribe Tychini. Tychins are most diverse in the Holarctic region, with only a very few species found in southern and south-east Asia. Chandler (1988) characterised the Tychini by the shape of the third segment of the palp, which is invariably longer than wide, and by the antennae usually being inserted close together on a narrow rostrum, though this varies a lot in distinctiveness between species. Kurbatov & Sabella (2008) also identified a number of other features representing possible synapomorphies of the Tychini, and suggested that the Oriental genera Atychodea and Amorphodea represent the sister taxon of the remaining Holarctic genera. The genera of Tychini are all fairly similar in appearance; notable distinguishing features of Tychus include an asymmetrical aedeagus (the intromittent organ in the male genitalia) and the arrangement of foveae (hollows) on the elytra and sternites. Males of Tychus often have one of the antennal segments modified as in the male of T. niger shown above, with a median segment noticeably thicker and broader than those on either side. The purpose of this enlarged segment, as with so many other features of pselaphines, seems to be unknown.


Chandler, D. S. 1988. A cladistic analysis of the world genera of Tychini (Coleoptera: Pselaphidae). Transactions of the American Entomological Society 114 (2): 147-165.

Heer, O. 1841. Fauna Coleopterorum Helvetica, pars 1. Impensis Orelii, Fuesslini et Sociorum: Turici.

Kurbatov, S. A., & G. Sabella. 2008. Revision of the genus Atychodea Reitter with a consideration of the relationships in the tribe Tychini (Coleoptera, Staphylinidae, Pselaphinae). Transactions of the American Entomological Society 134 (1-2): 23-68.

A Skinny Waist is Not That Important

Female Clitemnestra bipunctata carrying prey back to its nest. Copyright Bill Johnson.

It's time for another post on crabronid wasps! The hard-working individual in the photo above is Clitemnestra bipunctata, a species found in the United States of North America. This is the only species of this genus found north of Mexico; other species are found in South America and in Australasia (Australia, New Guinea and New Caledonia). Clitemnestra belongs to the Gorytini, a closely related tribe to the Bembicini featured in an earlier post, though C. bipunctata is smaller than the average bembicin. You can find a good description of the biology of C. bipunctata at Bug Eric's website.

When Bohart & Menke (1976) prepared their revision of the Sphecidae (which then included the current Crabronidae), they included Clitemnestra in the genus Ochleroptera. Ochleroptera was recognised as closely related to Clitemnestra, but the two genera were distinguished by the shape of the metasoma (the effective abdomen). In Ochleroptera, the first segment of the metasoma is relatively long and narrow, and there is a distinct constriction between it and the remainder of the metasoma (you can see this clearly in the picture above). In Clitemnestra, this segment is shorter and broader, and it is not so divided from the other segments. Because the latter arrangement is the more primitive, Bohart & Menke suggested that Ochleroptera was descended from Clitemnestra, and because both genera were found in both South America and Australasia, they suggested that the two genera had both originated in Australasia and dispersed independently to South America.

Habitus of Clitemnestra noumeae, from Ohl (2002).

However, it was soon realised that the distinction between the two genera was not as clear as had been thought. A number of species were identified in South America in which the segment shape was intermediate: a bit long and narrow for 'Clitemnestra', but not narrow enough for 'Ochleroptera'. As there were no other significant features distinguishing the genera, they were eventually synonymised. Subsequently, Ohl (2002) described another species, Clitemnestra noumeae, from New Caledonia that also has an intermediate metasomal form. Though no formal analysis has yet been done to confirm things one way or another, it seems likely that 'Clitemnestra' and 'Ochleroptera' do not represent independent dispersals between Australasia and the Americas. Instead, 'Ocheroptera' species have probably arisen independently within Clitemnestra on more than one occasion.

To date, Clitemnestra bipunctata is the best studied species in the genus natural history-wise; other species have only been described on sporadic occasions. Clitemnestra species nest in burrows in vertical banks, which they primarily stock with various species of leafhoppers. In the case of one Australian species, C. plomleyi, it was suggested that the burrows it was seen using were not dug by the wasp itself, but had been left behind by beetles or other wasps (Evans & O'Neill 2007). It remains to be seen whether this is typical behaviour for the species, or it may have represented opportunistic behaviour by one enterprising individual.


Bohart, R. M., & A. S. Menke. 1976. Sphecid Wasps of the World: a generic revision. University of California Press.

Evans, H. E., & K. M. O'Neill. 2007. Sand Wasps: Natural History and Behavior. Harvard University Press.

Ohl, M. 2002. A new species of the wasp genus Clitemnestra Spinola, 1851 from New Caledonia (Hymenoptera, Apoidea, Crabronidae, Bembicinae). Deutsche Entomologische Zeitschrift 49 (2): 275-278.

Hunter Balls: The Hydracha Water-Mites

Hydrachna sp., copyright J. C. Schou.

Hydrachnae are among the most rapacious of living animals, bold, fierce and cruel, the natural and inveterate enemies of all their congenera; they are no less hostile to each other, against which is waged a permanent war of extermination. Neither do they hesitate in attacking such animals as are suitable to their appetites, though double the size of their assailant.

This lurid description was applied to the water-mites by John Graham Dalyell in his 1851 book, The Powers of the Creator displayed in the Creation, or observations on life amidst the various forms of the humbler tribes of animated nature. The water-mites are a diverse group found mostly in fresh waters around the world; Dalyell probably intended the name Hydrachna to cover all water-mites, but modern authors recognise a large number of genera and families in addition to Hydrachna (which is distinctive enough that it is placed in its own family. Whether Hydrachna proper deserves the full force of Dalyell's description may be debatable, but there is no denying that they are predators.

As explained in an earlier post, water-mites belong to a group of mites, variously referred as Parasitengonae, Parasitengonina or some variation thereof (depending where you look), that is characterised by a life cycle including parasitic larvae and predatory adults. In the case of Hydrachna, the adults, which are nearly spherical in shape and bright red in colouration, feed on the eggs of aquatic bugs such as water boatmen or backswimmers that they find attached to submerged plants (so for all his charcterisation of Hydrachna as 'bold, fierce and cruel', Dalyell probably committed no less horrific an act of cruelty to chickens when he sat down to a fried breakfast). Despite their aquatic habits, Hydrachna are only clumsy swimmers themselves. After all, it does not require any great athleticism to hunt down an egg.

Larvae of Hydrachna, copyright Pfliegler Walter.

As well as finding their food on submerged plants, female Hydrachna lay their own eggs in them. They have needle-like chelicerae that they use to cut into the plant's stem, and then lay their eggs in air spaces within the plant cells (up to 1500 at a time: Walter et al. 2009). When the eggs hatch, the emerging larvae (which are kind of rugby ball-shaped) swim in search of a suitable host. Usually, this is a water-bug of much the same sort whose eggs were being devoured by the larvae's parents, though some Hydrachna species have also been recorded parasitising aquatic beetles. While some water-mites are quite picky about where exactly they choose to attach to a host, Hydrachna are not so: they may attach pretty much anywhere. They also do not exclude each other: a single host insect may end up with a large number of Hydrachna larvae attached to it (enough to have a serious impact on the host's health). The palps on either side of the chelicerae are used to initially hold on to the host before the larva cuts into the host cuticle with its chelicerae; once its hold with the chelicerae is firm, the palps are folded out of the way (Redmond & Lanciani 1982). Once attached, feeding on the host's haemolymph may not commence immediately: if the larva has found itself on a host that has not yet reached maturity, it will often wait until after the host has moulted. This is because the feeding larva becomes massively engorged and may swell up to hundreds of times its original size. In this swollen state, it obviously becomes immobile (one cannot walk if one's legs no longer touch the ground); should the host shed its cuticle with the engorged larva attached, the larva would be unable to reattach itself to the host.

After about two weeks of feeding, the larva is ready to mature, but this does not necessarily mean leaving the host. In parasitengonines, the first nymphal instar (the protonymph) after the larval stage is dormant as the mite metamorphoses into something closer to its adult form, the first of the two 'pupal' stages that the mite will go through in its life (the second comes between the active deutonymphal instar and maturity, but involves less of a radical change in morphology). Hydrachna passes this 'pupal' stage while still attached to the host, only detaching when it becomes an active deutonymph. As well as saving the larva the inconvenience (and danger) of dropping off the host while in an engorged state, this helps ensure that the deutonymph emerges in a suitable habitat. Hydrachna prefers still waters, such as ponds and lakes. Some species of Hydrachna prefer to breed in temporary seasonal pools, and may remain attached to the host for several months while their home pools are dry. Somehow they can tell the difference between the temporary pools and the more permanent waters in which the hosts spend the rest of their time.


Redmond, B. L., & C. A. Lanciani. 1982. Attachment and engorgement of a water mite, Hydrachna virella (Acari: Parasitengona), parasitic on Buenoa scimitra (Hemiptera: Notonectidae). Transactions of the American Microscopical Society 101 (4): 388-394.

Smith, I. M., D. R. Cook & B. P. Smith. 2010. Water mites (Hydrachnidiae) and other arachnids. In: Thorp, J. T., & A. P. Covich (eds) Ecology and Classification of North American Freshwater Invertebrates, pp. 485-586. Academic Press.

Walter, D. E., E. E. Lindquist, I. M. Smith, D. R. Cook & G. W. Krantz. 2009. Order Trombidiformes. In: Krantz, G. W., & D. E. Walter (eds) A Manual of Acarology, 3rd ed., pp. 233-420. Texas Tech University Press.

Black Yeasts, Black Lichens and Rotting Wood: the Chaetothyriomycetidae

Pyrenula cruenta, copyright Gary Perlmutter.

There is no denying that the advent of molecular phylogenetic analysis has been a boon for fungal systematics. It has allowed a much greater resolution of relationships than was previously possible (especially for comparisons between asexually- and sexually-reproducing fungi), and has even lead to the identification of a number of major lineages that probably could have never been recognised from morphological data alone. One such lineage is the Chaetothyriomycetidae, whose members vary from lichens on tropical tree trunks, to saprobes living in the deep sea, to pathogens in the brains of humans.

The Chaetothyriomycetidae (or Chaetothyriomycetes in many older references: the botanical code goes rather all out in the rather irritating practice of changing the endings of names to indicate arbitrary taxonomic ranks) has been divided by Gueidan et al. (2014) into four major lineages. Two of these, the Pyrenulales and Verrucariaceae, are mostly comprised of lichens. Lichenised fungi in the Pyrenulales associate with green algae of the family Trentopohliaceae (which, despite being 'green algae', are generally orange in colour), and are most commonly found on tree bark in tropical forests. Only one lichenised genus, Strigula, is also found growing on leaves; non-lichenised Pyrenulales are found on bark, leaves or wood (Geiser et al. 2006).

Verrucaria maura on coastal rocks, copyright A. J. Silverside.

The Verrucariaceae, in contrast, associate with different symbiotic algae, and prefer to grow on rocks. Lichens of this family are often blackish; their hyphae are darkened by a melanin-like compound which allows them to tolerate quite exposed conditions. Certain species are particularly prominent around the marine shoreline. Gueidan et al. (2014) also identified a small as-yet-unnamed lineage close to Verrucariaceae including rock-dwelling and moss-associated non-lichenised fungi, but support for this grouping requires further testing.

Another somewhat novel lineage identified by Gueidan et al. (2014) was the Celotheliaceae. The type genus, Celothelium, is a lichenised fungus that associates with the alga Trentepohlia in the manner of Pyrenulaceae. Other members of the Celotheliaceae, however, are quite different in ecology, being mostly pathogens of woody plants. Phaeomoniella chlamydospora is a causative agent of grapevine trunk disease, resulting in conditions such as esca, and the rather ominously named 'black goo decline' (so-called because the stems become filled with 'black goo', as the xylem vessels become clogged with fungal hyphae). Dolabra nepheliae causes canker in lychee and rambutan trees. These pathogenic taxa are commonly largely anamorphic (that is, they produce asexual reproductive structures).

Culture of black yeast Exophiala dermatitidis, from here.

The last and most diverse lineage (so far as we know, anyway) is the Chaetothyriales. Like the Verrucariaceae, the Chaetothyriales have melanised hyphae and often grow on exposed substrates such as rocks. Indeed, molecular analyses have supported a closer relationship between Verrucariaceae and Chaetothyriales than the other major lineages. However, members of the Chaetothyriales are not lichenised. Many are saprobic; others, such as the Chaetothyriaceae, grow on plant leaves but in many cases it is unclear whether they are saprobic or parasitic. The mostly saprobic family Herpotrichiellaceae also includes a number of asexually-reproducing forms that grow as yeasts and are opportunistic pathogens, including in humans. Infections by black yeasts (Exophiala) are most commonly cutaneous and relatively superficial, but they can also cause severe and life-threatening infections of deeper organ systems. These infections are most common in patients with pre-existing conditions affecting the immune system, but at least one species, E. dermatitidis, has been recorded causing fatal brain infections in otherwise healthy individuals.

And I referred at the beginning of this post to the deep sea? Well, the Chaetothyriomycetidae samples from there are, I believe, yet to be described. It is possible that this diverse group of fungi still has surprises for us.


Geiser, D. M., C. Gueidan, J. Miadlikowska, F. Lutzoni, F. Kauff, V. Hofstetter, E. Fraker, C. L. Schoch, L. Tibell, W. A. Untereiner & A. Aptroot. 2006. Eurotiomycetes: Eurotiomycetidae and Chaetothyriomycetidae. Mycologia 98 (6): 1053-1064.

Gueidan, C., A. Aptroot, M. E. da Silva Cáceres, H. Badali & S. Stenroos. 2014. A reappraisal of orders and families within the subclass Chaetothyriomycetidae (Eurotiomycetes, Ascomycota). Mycol. Progress 13: 1027-1039.

Teasels and Scabious: the Dipsacaceae

Scabiosa cretica, copyright Ori Fragman Sapir.

As recognised plant families go, the Dipsacaceae is not a particularly large one. It includes only a few hundred species, of which the majority are found in arid regions around the Mediterranean and the remainder elsewhere in Africa and Eurasia. The economic significance of the family is also relatively low. Some species are cultivated as ornamental plants. Dipsacus fullonum, teasel, gets its vernacular name because its bottle-brush-like flower-heads were used to tease the fibres of woollen cloth. Various species of Dipsacaceae, particularly the genus Scabiosa, are known as 'scabious' because they were apparently once used somehow in treating scabies. I also came across a reference in Duke (2008) to Syrian scabious Cephalaria syriaca having had a certain notoriety in the past due to its seeds being similar in appearance to wheat grain, meaning that they could be inadvertently sown into fields, or impart an unpleasant taste if ground into flour.

Flowers and fruits of Sixalix atropurpurea, copyright Manuel M. Ramos. Members of this genus grow on sand; their fruits have a reduced membranous wing, and disperse by rolling.

Nevertheless, the Dipsacaceae are not without their points of interest. One intriguing characteristic of the family is that they bear numerous small flowers clustered onto a single shared receptacle, similar to those of the much more diverse Asteraceae. Like Asteraceae, there may even be a differentiation in the appearance of flowers on the inner part of the receptacle from those around the outer rim. The Dipsacaceae are not directly related to the Asteraceae; rather, the two families have developed their capitate flower-heads independently. Which is not to say that they are incomparable: species of both Asteraceae and Dipsacaceae exhibit duplications of genes that are believed to affect the development of floral symmetry (Carlson et al. 2011), and it is possible that similar processes have lead to the evolution of compound flower-heads in both.

Flowers and fruits of Scabiosa sicula, copyright Jose Rodriguez. The fruiting head in focus shows the membranous wings that function in dispersal.

Past authors have divided the Dipsacaceae into three tribes, largely on the basis of characters related to seed dispersal. Each of the small flowers on a dipsacacean flower-head develops into a dry fruit containing a single seed. The epicalyx (an outer protective layer of the flower base) persists as an outer coating of the mature fruit, like a second skin. In the largest of the three previously recognised tribes, the Scabioseae, the epicalyx is often modified for wind dispersal, either by plumose hairs on top of a dorsal tube (the same sort of set-up as seen in dandelions) or by a membranous wing around the fruit. In contrast, the fruit of the genus Knautia, widow flowers, which has been placed in its own separate tribe, bears an elaiosome, a fleshy, hemispherical lump. The elaiosome attracts ants, who carry the fruit away to their nest; after the ants have eaten the elaiosome, the remaining seed is able to germinate where they leave it. Finally, the third tribe Dipsacaceae includes only the genera Dipsacus and Cephalaria; the mature fruit of these genera lack adaptations for either wind or ant dispersal, and seed dispersal is largely controlled by the break-up of the flower-head itself.

Bassecoia bretschneideri, copyright Dave Boufford.

More recent molecular analyses, however, have not entirely supported this three-way division of the Dipsacaceae (Carlson et al. 2009). While Knautia and the Dipsaceae are both likely to be monophyletic, the Scabioseae are not. Instead, a small clade including the eastern Asian genus Bassecoia is sister to the remaining members of the family. These fall into two major clades: one, that has been referred to as the Scabioseae 'sensu stricto', includes the majority of the taxa previously included in the Scabioseae, such as Scabiosa, Lomelosia and Pterocephalus. The other clade, which has been dubbed the 'dipknautids', includes Knautia and the Dipsaceae, together with a few smaller 'ex-Scabioseae' genera. While the original Dipsacaceae may have been wind-dispersed, they have not been above looking at alternatives.


Carlson, S. E., D. G. Howarth & M. J. Donoghue. 2011. Diversification of CYCLOIDEA-like genes in Dipsacaceae (Dipsacales): implications for the evolution of capitulum inflorescences. BMC Evolutionary Biology 11: 325. doi:10.1186/1471-2148-11-325.

Carlson, S. E., V. Mayer & M. J. Donoghue. 2009. Phylogenetic relationships, taxonomy, and morphological evolution in Dipsacaceae (Dipsacales) inferred by DNA sequence data. Taxon 58 (4): 1075-1091.

Duke, J. A. 2008. Duke's Handbook of the Medicinal Herbs of the Bible. CRC Press.

Friend and/or Foe: Separating Rhizobium and Agrobacterium

Roots of cowpea Vigna unguiculata with nodules containing Rhizobium, copyright Dave Whitinger.

For as far back as we have records to know, farmers have recognised the value of crop rotation: varying the crops grown on a particular patch of land in order to avoid exhausting the soil of nutrients. It also did not take these ancient farmers long to realise the value of one of these rotated crops being a legume, the group of plants including peas, beans, lentils and the like. What these pioneers of agriculture did not know was that the rejuvenating effect that legumes seemed to have on the soil was due to bacteria living in their roots, the organisms that we now know as Rhizobium.

The value of Rhizobium to agriculture comes from its ability to fix nitrogen. Nitrogen compounds are essential for all living organisms (proteins, for instance, contain nitrogen). But while nitrogen is also the most abundant element in our planet's atmosphere, most of it exists in a form that cannot be used directly by most organisms. Nitrogen-fixing bacteria are the exception, able to extract the nitrogen directly from the atmosphere and 'fix' it into more tractable compounds. Rhizobium is not the only genus of bacteria able to fix nitrogen, but it is certainly one of the most predominant. One of the limitations of nitrogen fixation is that it generally involves enzymes that do not work well in the presence of oxygen. Rhizobium cells induce the growth of nodules on legume roots, within which they are sheltered from that polluting gas. Not all Rhizobium live in legumes, however: they may also be found in large numbers free in the soil, with concentrations of tens of millions of cells per gram of soil having been recorded (Kuykendall et al. 2005).

Crown gall caused by Agrobacterium tumefaciens, copyright Christoph Müller.

Rhizobium has been regarded as closely related to another bacterial genus called Agrobacterium, whose significance for agriculture has been seen somewhat less favourably. As classically distinguished, Agrobacterium species do not fix nitrogen like Rhizobium, but they do resemble Rhizobium in causing growths on plant roots. These might be tumours, as in Agrobacterium tumefaciens (which can also cause galls to form elsewhere on the plant), or an overabundance of small rootlets, as in A. rhizogenes. While not necessarily fatal to the host plant, these deformities do often stunt growth, causing a loss in yield. A third species, A. radiobacter, has been recognised for non-pathogenic Agrobacterium.

However, as microbiologists gained a better understanding of the underlying genetics of Rhizobium and Agrobacterium, the picture became more complicated. The ability of Rhizobium to fix nitrogen, and of Agrobacterium to cause root deformities, is due to particular sets of genes in each. These genes are not contained in the main chromosome of each bacterium, but are held in little 'mini-chromosomes' called plasmids. And plasmids can be readily transferred from one bacterial cell to another. Through the transfer of the right plasmids, an Agrobacterium might gain the ability to fix nitrogen, or a Rhizobium might start inducing tumours. Phylogenetic analyses of the genera also indicated that some 'Rhizobium' were more closely related to 'Agrobacterium', and vice versa. As a result, at least one group of researchers has proposed uniting the two genera into one, Rhizobium. But others have been loathe to abandon a name as long-used in both the microbiological and agricultural literature as Agrobacterium (Farrand et al. 2003). There are recognisably distinct phylogenetic lines within the family Rhizobiaceae that includes the two genera, and even differences in plasmids are not entirely uninformative: not all strains can utilise all plasmids.

Cells of Rhizobium trifolii on root hair of clover, copyright Frank Dazzo.

There are also some significant genomic differences involved. Some of you may have learnt in biology class that the normal arrangement for bacterial cells is to have the bulk of the genome contained in a single circular chromosome, possibly with a scattering of small plasmids. The difference between the two is that the cell can function without the plasmids, but not without the chromosome. Rhizobium leguminosarum, the type species of Rhizobium, keeps to this arrangement, as do most other Rhizobium (though the plasmid containing the nitrogen-fixation genes is a bit of a whopper by usual standards). However, Agrobacterium tumefaciens*, the type species of its genus, is more unusual in having not one but two chromosomes: some of its vital genes have been transferred to what was originally a large plasmid (Slater et al. 2009). What is more, this second chromosome is not formed as a circle like other bacterial chromosomes, but is linear like the chromosomes of eukaryotes. Another 'Agrobacterium' species, A. vitis, has the second chromosome like A. tumefaciens but it remains circular. The type strain of A. rhizogenes, on the other hand, has only a single circular chromosome, and appears to be closer to Rhizobium.

*The type strains of 'Agrobacterium tumefaciens' and 'A. radiobacter' are close enough that the two names should be synonymised into a single species. However, there seems to be an on-going dispute over which of the two names should be used for the combined taxon. I'm using A. tumefaciens for convenience, but I wouldn't be able to judge which of the sides is correct.

Phylogenetic analysis also supports the recognition of a further genus of Rhizobiaceae, Ensifer, sitting outside the clade including Rhizobium and Agrobacterium. The type species of Ensifer, E. adhaerens, is a soil-dwelling bacterium that can live as a predator of other bacteria. It attaches to them end-wise (when multiple E. adhaerens attach to a single target cell, they may form a palisade) and causes them to burst open. Ensifer adhaerens is not an obligate predator—when suitable prey is not available, it can survive on free nutrients in the soil—and when analysed it turns out to be related to a clade of nitrogen-fixing bacteria previously recognised as the genus 'Sinorhizobium'. Indeed, one species of this genus turned out to be simply a non-parasitic form of E. adhaerens (Young 2003).


Farrand, S. K., P. B. van Berkum & P. Oger. 2003. Agrobacterium is a definable genus of the family Rhizobiaceae. International Journal of Systematic and Evolutionary Microbiology 53 (5): 1681-1687.

Kuykendall, L. D., J. M. Young, E. Martínez-Romero & H. Sawada. 2005. Genus I. Rhizobium Frank 1889, 337AL. In: Garrity, G., D. J. Brenner, N. R. Krieg & J. T. Staley (eds) Bergey's Manual of Systematic Bacteriology vol. 2. The Proteobacteria, Part C. Springer.

Slater, S. C., B. S. Goldman, B. Goodner, J. C. Setubal, S. K. Farrand, E. W. Nester, T. J. Burr, L. Banta, A. W. Dickerman, I. Paulsen, L. Otten, G. Suen, R. Welch, N. F. Almeida, F. Arnold, O. T. Burton, Z. Du, A. Ewing, E. Godsy, S. Heisel, K. L. Houmiel, J. Jhaveri, J. Lu, N. M. Miller, S. Norton, Q. Chen, W. Phoolcharoen, V. Ohlin, D. Ondrusek, N. Pride, S. L. Stricklin, J. Sun, C. Wheeler, L. Wilson, H. Zhu & D. W. Wood. 2009. Genome sequences of three Agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria. Journal of Bacteriology 191 (8): 2501-2511.

Young, J. M. 2003. The genus name Ensifer Casida 1982 takes priority over Sinorhizobium Chen et al. 1988, and Sinorhizobium morelense Wang et al. 2002 is a later synonym of Ensifer adhaerens Casida 1982. Is the combination ‘Sinorhizobium adhaerens’ (Casida 1982) Willems et al. 2003 legitimate? Request for an Opinion. International Journal of Systematic and Evolutionary Microbiology 53 (6): 2107-2110.

The Gordian Mouse

North American deer mouse from near Santa Fe, New Mexico, possibly Peromyscus sonoriensis. Copyright J. N. Stuart.

The North American deer mouse Peromyscus maniculatus has been recognised as one of the most widespread mammal species in North America. It has been recorded from most of the continent, with the main areas of absence being northern Canada and Alaska, the south-eastern corner of the United States (where it is replaced by a closely related species, the smaller Oldfield deer mouse Peromyscus polionotus) and coastal regions of Mexico. They are highly adaptable animals, eating a wide range of foods, and their tendency to gnaw just about anything available for food or nesting has not always endeared them to their human compatriots. In recent years, they have also received their fair share of unwelcome attention as vectors for pathogens such as the Sin Nombre hantavirus*, which causes a devastating (and commonly fatal) pulmonary disease in humans. It is therefore not surprising that the deer mouse has become one of the most extensively studied mammal species out there (not quite in house mouse or black rat territory, maybe, but still definitely up there). A search for 'Peromyscus maniculatus' on Google Scholar brings back well over 16,000 results. Surely with this degree of attention, this is at least one taxon for which I cannot deploy my usual 'the taxonomy is uncertain'?

*'Sin nombre' is, of course, Spanish for 'without name'. The reason for this coy appellation is that the virus in question was first labelled the 'Four Corners' virus after being identified from patients in that region of the United States in 1993, but was renamed after residents of the region protested.

Of course it isn't. Quite the opposite, in fact. With a range this large, it is not surprising that a fair amount of variability has been recognised in the North American deer mouse over the years. Over sixty subspecies of Peromyscus maniculatus have been recognised from various regions. This variability has also been part of the deer mouse's appeal as a study animal, as evolutionary scientists have examined the relationships between subspecies. The problem comes when you realise that in some places you may find two distinct 'subspecies' of deer mouse in a single locality. If a 'subspecies' is defined as a geographical sub-unit of a reproductively coherent species (as it traditionally has been), then that ain't right. Two taxa occupying a single range and not interbreeding should be separate species, surely? But travel to another location nearby, and you'll find the two 'species' interbreeding and merging into one. One case that has been cited as a classic example of a 'ring species' is around the Rocky Mountains, where the subspecies P. maniculatus artemisiae and P. m. nebrascensis do not interbreed with each other, but both interbreed with other subspecies to the north and south.

Part of the problem, of course, is that the 'species' is just a horrendously messy concept. There are a wealth of different species concepts out there, but the essential ideal underlying most is that a 'species' represents the point at which the reticulating relationships between interbreeding individuals become less important for understanding relationships than the branching relationships between population lineages. Which is not a point at all. Lineages diverge at multiple, quasi-independent levels in the process of speciation—they separate geographically, behaviourally, genetically, morphologically—and there is no magic point at which they suddenly change from 'one species' to 'separate species'. Nevertheless, as the recent trend has been to recognise species on a finer level than in the past, it seems likely that the future will see a subdivision of the current Peromyscus maniculatus.

Figure showing distributions of lineages of Peromyscus maniculatus from Kalkvik et al. (2012).

Over much of its range, Peromyscus maniculatus can be divided between two main morphotypes: a forest form with larger ears and a longer tail, and an open-country form with smaller ears and a shorter tail. Where the two forms are found in one region, they maintain their ecological distinctiveness. However, because of the aforementioned hybridisation between geographically adjacent populations, it is unlikely that any subdivision of P. maniculatus will be directly between these two morphotypes. One split that has already been widely accepted was proposed by Hogan et al. (1993), who found that certain populations in coastal north-west North America were genetically quite distinct from other P. maniculatus, and recommended the recognition of a separate species P. keeni. Peromyscus keeni is also generally larger and longer-tailed than P. maniculatus. However, more recent studies of the phylogeography of North American deer mice by Dragoo et al (2006) and Kalkvik et al. (2012) have found that even with the removal of P. keeni, P. maniculatus remains paraphyletic to both that species, to the south-west species P. polionotus (whose distinction from P. maniculatus has not generally been questioned), and possibly to the Mexican P. melanotis. Both the later studies identified six major lineages within P. maniculatus, and Dragoo et al. (2006) suggested that it may need to be divided between at least three species. The 'true' Peromyscus maniculatus, under this scheme, includes the two lineages found in the north-east of North America (the original type locality of the species being in Labrador). A coastal lineage found in the south-west was identified by both studies as related to P. keeni, and it remains to be seen whether it would be better included in that species or recognised as its own separate species. A lineage identified in southern New Mexico could be recognised under the name of Peromyscus blandus. The remaining two lineages, one found around the Rocky Mountains and one in the Great Plains, formed a clade that Kalkvik et al. (2012) identified as the sister lineage of P. polionotus. Dragoo et al. suggested that the name Peromyscus sonoriensis was available for this clade. However, Kalkvik et al. recognised that the Rocky Mountain lineage was a forest form and the Great Plains lineage a open-country form, so there may be grounds for their recognition as distinct species.

While the correlation between these studies appears promising, it must be stressed that both were analysing the same gene (cytochrome b) and it remains to be seen whether the lineages they identified continue to be supported by other sources of data. It also needs to be seen whether they stand up to the inclusion of further populations: western Canada and Mexico stand out as poorly sampled areas in both studies. Peromyscus maniculatus in its current form may represent one species, it may represent four, or it may yet refer to even more than that.


Dragoo, J. W., J. A. Lackey, K. E. Moore, E. P. Lessa, J. A. Cook & T. L. Yates. 2006. Phylogeography of the deer mouse (Peromyscus maniculatus) provides a predictive framework for research on hantaviruses. Journal of General Virology 87: 1997-2003.

Hogan, K. M., M. C. Hedin, H. S. Koh, S. K. Davis & I. F. Greenbaum. 1993. Systematic and taxonomic implications of karyotypic, electrophoretic, and mitochondrial-DNA variation in Peromyscus from the Pacific Northwest. Journal of Mammalogy 74 (4): 819-831.

Kalkvik, H. M., I. J. Stout, T. J. Doonan & C. L. Parkinson. 2012. Investigating niche and lineage diversification in widely distributed taxa: phylogeography and ecological niche modeling of the Peromyscus maniculatus species group. Ecography 35: 54-64.